ABOUT THIS RECORDspecies: Gossypium hirsutum
source: microPC, original name: miR482
Taxonomy by NCBI:
Gossypium hirsutum Gossypium Malvoideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCTTTCCTACTCCTCCCAT miRNA* GGGATGGGTGGAAAGATT mismatches: 1 bulges: 1 |
pre-miRNA
TGTGGGATGGGTGGAAAGATTTGTATTTTCTCTCTTGAGTTTCTAAGAATGTAAAGCAAATCTTTCCTACTCCTCCCAT
dot-bracket secondary structure
)((((((.((((((((((((((((.(((.(..(((((......)))))..).))))))))))))))).)))).))))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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TGTGGGATGGGTGGAAAGATTTGTATTTTCTCTCTTGAGTTTCTAAGAATGTAAAGCAAATCTTTCCTACTCCTCCCAT
dot-bracket secondary structure
)((((((.((((((((((((((((.(((.(..(((((......)))))..).))))))))))))))).)))).))))))
SIMILARITIES| miRBase ghr-MIR482a: 5.0E-39 PMRD ghr-miR482a: 5.0E-39 microPC miR472: 5.0E-39 | UniProt no hits RFAM no hits |
Identical with: miR472 from microPC (MNEST046297), ghr-miR482a from PMRD , ghr-MIR482a from miRBase |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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