ABOUT THIS RECORDspecies: Cichorium endivia
source: microPC, original name: miR156
Taxonomy by NCBI:
Cichorium endivia Cichorium Cichoriinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGACAGAAGAGAGGGAGCA miRNA* CTCTCTTTCTATCTGTCA mismatches: 1 bulges: 1 |
pre-miRNA
TGACAGAAGAGAGGGAGCATTCATAGTTCTTGCATGAAAGAAATCATGCTTGAATTTATGTATGCTCTCTTTCTATCTGTCA
dot-bracket secondary structure
.(((((((((((((((((((.((((((((..((((((......))))))..))).))))).))))))))))))).)))))).
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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TGACAGAAGAGAGGGAGCATTCATAGTTCTTGCATGAAAGAAATCATGCTTGAATTTATGTATGCTCTCTTTCTATCTGTCA
dot-bracket secondary structure
.(((((((((((((((((((.((((((((..((((((......))))))..))).))))).))))))))))))).)))))).
SIMILARITIES| miRBase vvi-MIR156a: 0.001 PMRD vvi-miR156a: 0.001 microPC miR156: 2e-41 | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
download this record
