miRNEST 2.0, an integrative microRNA resource :: Browse
Home
Browse miRNAs
Deep-seq predictions
Mirtrons
miRNA genes
Degradomes
Download
Upload
Contact
Back to search results
ABOUT THIS RECORD
ID:
MNEST045297
species:
Brassica napus
source:
microPC, original name:
miR319
Taxonomy by NCBI:
Brassica napus
Brassica
Brassicaceae
Brassicales
malvids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TTGGACTGAAGGGAGCTCCC
miRNA*
GAGCTTTCTTCGGTCCACTC
mismatches:
3
bulges:
0
View larger
pre-miRNA
GG
GAGCTTTCTTCGGTCCACTC
ATAGAATAATATGTGAGATTTAATTGACTCTCGACTCATTCATCCAAATACCAAATGAAAGAATATGTAGACATATGG
TAAATGAATGAATGATGCTAGAGACAAATTGAATCTTCACTTCTCTATGC
TTGGACTGAAGGGAGCTCCC
dot-bracket secondary structure
((
(((((..((((((((((..(
(((((.......(((((((((((((..((((.(..((((((((.((..(((((.(((..............))).)))
))..)).))))))))..).))))...))))))))).))))...)))))).
.))))))))))..)))))))
SIMILARITIES
miRBase
ath-MIR319b
:
3e-73
PMRD
ath-miR319b
:
3e-73
microPC
miR319
:
2e-93
UniProt
no hits
RFAM
MIR159: 6e-72
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
true miRNA
download this record