ABOUT THIS RECORDspecies: Brassica napus
miRNA family: MIR156
source: microPC, original name: miR157
Taxonomy by NCBI:
Brassica napus Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGACAGAAGAAAGAGAGCAC miRNA* GCTCTCTTTACTTCTGTCA mismatches: 1 bulges: 1 |
pre-miRNA
TTGACAGAAGAAAGAGAGCACAAGCCGGGATTAGCAAATATAAAGTTTTGCCCTTGTCGGGAGTGTGCTCTCTTTACTTCTGTCA
dot-bracket secondary structure
.(((((((((((((((((((((..((.((....(((((........))))).....)).))..)))))))))))).)))))))))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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TTGACAGAAGAAAGAGAGCACAAGCCGGGATTAGCAAATATAAAGTTTTGCCCTTGTCGGGAGTGTGCTCTCTTTACTTCTGTCA
dot-bracket secondary structure
.(((((((((((((((((((((..((.((....(((((........))))).....)).))..)))))))))))).)))))))))
SIMILARITIES| miRBase ath-MIR156h: 5e-27 PMRD ath-miR156h: 5e-27 microPC miR156: 2e-42 | UniProt no hits RFAM mir-156: 0.0003 |
Identical with: miR156 from microPC (MNEST045619) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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