ABOUT THIS RECORDspecies: Populus tremula
source: microPC, original name: miR159
Taxonomy by NCBI:
Populus tremula Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTTGGATTGAAGGGAGCTCT miRNA* AGCTCCTTGAAGTCCAATAG mismatches: 3 bulges: 0 |
pre-miRNA
GGAGCTCCTTGAAGTCCAATAGAAGCTCCTGCTGGGTAGATCGAGCTGCTGAGCTATGAATCCCACAGCCCTATCACCATCTGTTATTTTGACGGGCCTG
CGGCTTGCATATCTCAGGAGCTTTATTACCTAATGTTGGATCTTTTTTTGGATTGAAGGGAGCTCT
dot-bracket secondary structure
((((((((((..(((((((.(((((.(((.(((((((((...(((((.(((((.((((....((.(((.((..(((.............)))..)).)))
.))....)))).))))).)))))..)))))))..)).))).))))).)))))))..))))))))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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GGAGCTCCTTGAAGTCCAATAGAAGCTCCTGCTGGGTAGATCGAGCTGCTGAGCTATGAATCCCACAGCCCTATCACCATCTGTTATTTTGACGGGCCTG
CGGCTTGCATATCTCAGGAGCTTTATTACCTAATGTTGGATCTTTTTTTGGATTGAAGGGAGCTCT
dot-bracket secondary structure
((((((((((..(((((((.(((((.(((.(((((((((...(((((.(((((.((((....((.(((.((..(((.............)))..)).)))
.))....)))).))))).)))))..)))))))..)).))).))))).)))))))..))))))))))
SIMILARITIES| miRBase ptc-MIR159b: 5e-69 PMRD ptc-miR159b: 5e-69 microPC miR159: 1e-78 | UniProt no hits RFAM MIR159: 3e-67 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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