ABOUT THIS RECORDspecies: Saccharum officinarum
source: microPC, original name: miR827
Taxonomy by NCBI:
Saccharum officinarum Saccharum officinarum complex Saccharum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTAGATGACCATCAGCAAAC miRNA* TTGTTGGTGGTCATTTAACC mismatches: 1 bulges: 0 |
pre-miRNA
GTTTTGTTGGTGGTCATTTAACCATGCTTCCATCGATGGGTGCATGGTTTATGGCAGAGTGTGATGCCATGAACTCATCATGGTCATGCATGTGTGCATG
GTTAGATGACCATCAGCAAAC
dot-bracket secondary structure
..(((((((((((((((((((((((((..((((.(((((((.((((((..((.((.....)).)))))))).))))))))))).(((....))).)))))
)))))))))))))))))))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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GTTTTGTTGGTGGTCATTTAACCATGCTTCCATCGATGGGTGCATGGTTTATGGCAGAGTGTGATGCCATGAACTCATCATGGTCATGCATGTGTGCATG
GTTAGATGACCATCAGCAAAC
dot-bracket secondary structure
..(((((((((((((((((((((((((..((((.(((((((.((((((..((.((.....)).)))))))).))))))))))).(((....))).)))))
)))))))))))))))))))).
SIMILARITIES| miRBase ssp-MIR827: 2e-64 PMRD osa-miR827b: 0.000006 microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
download this record
