ABOUT THIS RECORDspecies: Nicotiana tabacum
source: microPC, original name: miR172
Taxonomy by NCBI:
Nicotiana tabacum Nicotiana Nicotianeae Nicotianoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GAATCCTGATGATGCTGCA miRNA* CAGTAGGAGGGTATTC mismatches: 4 bulges: 3 |
pre-miRNA
GCAGTAGGAGGGTATTCGGATACAGAGTGGTAGTGGTAGAGAATCCTGATGATGCTGCA
dot-bracket secondary structure
((((((..(((((.(((...(((.........)))...))).))))).....)))))).
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
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GCAGTAGGAGGGTATTCGGATACAGAGTGGTAGTGGTAGAGAATCCTGATGATGCTGCA
dot-bracket secondary structure
((((((..(((((.(((...(((.........)))...))).))))).....)))))).
SIMILARITIES| miRBase ptc-MIR172i: 0.00001 PMRD sof-miR172a: 0.0000002 microPC no hits | UniProt no hits RFAM mir-172: 0.0007 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
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