ABOUT THIS RECORDspecies: Oryza sativa
source: microPC, original name: miR1428
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAAGATAATGCCGTGAATT miRNA* TTCGCATGCCCTATCTTGTG mismatches: 3 bulges: 1 |
pre-miRNA
AATTCGCATGCCCTATCTTGTGGTATGAACTGAGCACACGATAATTTATGGTGCGTATTGGGGGCTTACAATAAGATAATGCCGTGAATT
dot-bracket secondary structure
(((((((..((..((((((((.(((.(..((.(((.(((.(((...))).))).))..).))..).))).))))))))..)).)))))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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deep sequencing data evidence
AATTCGCATGCCCTATCTTGTGGTATGAACTGAGCACACGATAATTTATGGTGCGTATTGGGGGCTTACAATAAGATAATGCCGTGAATT
dot-bracket secondary structure
(((((((..((..((((((((.(((.(..((.(((.(((.(((...))).))).))..).))..).))).))))))))..)).)))))))
SIMILARITIES| miRBase osa-MIR1428c: 5e-27 PMRD osa-miR1428c: 5e-27 microPC miR1428: 4e-46 | UniProt no hits RFAM MIR1428: 8e-45 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
download this record
deep sequencing data evidence
