ABOUT THIS RECORDspecies: Gossypium hirsutum
miRNA family: MIR396
source: microPC, original name: miR396
Taxonomy by NCBI:
Gossypium hirsutum Gossypium Malvoideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTCCACAGCTTTCTTGAACTG miRNA* GTTCAATAAAGCTGTGGGA mismatches: 1 bulges: 0 |
pre-miRNA
ATTCCACAGCTTTCTTGAACTGCAATTTCATGTAATCAGATCATTCATTCATTCGTTGTCGTTGATGGTGCTGCATATATACGAGTACGTTGTTGCGGTTC
AATAAAGCTGTGGGA
dot-bracket secondary structure
)((((((((((((.((((((((((((...(((((....((....))............((((..(((......)))....)))).))))).))))))))))
)).))))))))))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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ATTCCACAGCTTTCTTGAACTGCAATTTCATGTAATCAGATCATTCATTCATTCGTTGTCGTTGATGGTGCTGCATATATACGAGTACGTTGTTGCGGTTC
AATAAAGCTGTGGGA
dot-bracket secondary structure
)((((((((((((.((((((((((((...(((((....((....))............((((..(((......)))....)))).))))).))))))))))
)).))))))))))))
SIMILARITIES| miRBase ghr-MIR396a: 7.0E-61 PMRD ghr-miR396b: 7.0E-61 microPC miR396: 7.0E-61 | UniProt no hits RFAM 6MIR396: 4.0E-7 |
Identical with: ghr-miR396b from PMRD (MNEST048507), ghr-MIR396a from miRBase |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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