ABOUT THIS RECORDspecies: Bruguiera gymnorhiza
miRNA family: MIR396
source: microPC, original name: miR396
Taxonomy by NCBI:
Bruguiera gymnorhiza Bruguiera Rhizophoraceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTCCACAGCTTTCTTGAACTG miRNA* GTTCAATAAAGCTGTGGGA mismatches: 1 bulges: 0 |
pre-miRNA
ATTCCACAGCTTTCTTGAACTGCATCTCTTAGATTTGTTTTTGCATGCCACGGTTTCTGGCTGGACGACTTGTGGATTTGCGGTTCAATAAAGCTGTGGGA
dot-bracket secondary structure
)((((((((((((.((((((((((..(((..((.((((((......((((.......)))).)))))).))..)))..)))))))))).))))))))))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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ATTCCACAGCTTTCTTGAACTGCATCTCTTAGATTTGTTTTTGCATGCCACGGTTTCTGGCTGGACGACTTGTGGATTTGCGGTTCAATAAAGCTGTGGGA
dot-bracket secondary structure
)((((((((((((.((((((((((..(((..((.((((((......((((.......)))).)))))).))..)))..)))))))))).))))))))))))
SIMILARITIES| miRBase zma-MIR396h: 5.0E-9 PMRD zma-miR396l: 5.0E-9 microPC miR396: 5.0E-52 | UniProt no hits RFAM 6MIR396: 9.0E-8 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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