ABOUT THIS RECORDspecies: Festuca arundinacea
source: microPC, original name: miR160
Taxonomy by NCBI:
Festuca arundinacea Festuca Loliinae Poeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCCTGGCTCCCTGTATGCC miRNA* CGTGCAAGGTGCCAAGCA mismatches: 4 bulges: 0 |
pre-miRNA
TGCCTGGCTCCCTGTATGCCACACATGTAGCCCAACCCAAGAATGTGGTTGCCTGCTGTGGGTGGCGTGCAAGGTGCCAAGCA
dot-bracket secondary structure
.((.((((.((.((((((((((.(((((((..(((((((....)).))))).)))).))).)))))))))).)).)))).)).
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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TGCCTGGCTCCCTGTATGCCACACATGTAGCCCAACCCAAGAATGTGGTTGCCTGCTGTGGGTGGCGTGCAAGGTGCCAAGCA
dot-bracket secondary structure
.((.((((.((.((((((((((.(((((((..(((((((....)).))))).)))).))).)))))))))).)).)))).)).
SIMILARITIES| miRBase bdi-MIR160c: 1e-30 PMRD sbi-miR160a: 2e-23 microPC miR160: 6e-42 | UniProt no hits RFAM mir-160: 3e-22 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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