ABOUT THIS RECORDspecies: Glycine max
source: microPC, original name: miR394
Taxonomy by NCBI:
Glycine max Glycine Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGGCATTCTGTCCACCTCC miRNA* AGGTGGGCATACTGTCAA mismatches: 3 bulges: 0 |
pre-miRNA
TTGGCATTCTGTCCACCTCCACTTCCTACTCTCTCTCTGAGCCACATGTTCGTGAAGTTGGAGGTGGGCATACTGTCAA
dot-bracket secondary structure
.(((((.(.(((((((((((((((((.((.(((.....)))......))..).)))).)))))))))))).).))))).
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
degradome data
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deep sequencing data evidence
TTGGCATTCTGTCCACCTCCACTTCCTACTCTCTCTCTGAGCCACATGTTCGTGAAGTTGGAGGTGGGCATACTGTCAA
dot-bracket secondary structure
.(((((.(.(((((((((((((((((.((.(((.....)))......))..).)))).)))))))))))).).))))).
SIMILARITIES| miRBase gma-MIR394b: 1e-39 PMRD vvi-miR394c: 0.00006 microPC miR394: 1e-39 | UniProt no hits RFAM MIR394: 0.00006 |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
degradome data
download this record
deep sequencing data evidence
