ABOUT THIS RECORDspecies: Cucumis melo subsp. melo
source: microPC, original name: miR156
Taxonomy by NCBI:
Cucumis melo subsp. melo Cucumis melo Cucumis Cucurbitaceae Cucurbitales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CAGAAGATAGAGAGCACA miRNA* TGCTCTCTATGCTTCTG mismatches: 0 bulges: 1 |
pre-miRNA
CAGAAGATAGAGAGCACAGATGATGATATGCAAAAATTTCATCAATCATTATTATTAATATCATTCTTTGTTTTTTAGGGTTTAGAACTTTAGAGAGAGA
CATTATTATCCTTATCACTATGCATTTCACTCCATTTGTGCTCTCTATGCTTCTG
dot-bracket secondary structure
((((((((((((((((((((((.(((.(((((...............((((....)))).....((((...((((((((((.....))))))))))))))
....................))))).)))...)))))))))))))))).))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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CAGAAGATAGAGAGCACAGATGATGATATGCAAAAATTTCATCAATCATTATTATTAATATCATTCTTTGTTTTTTAGGGTTTAGAACTTTAGAGAGAGA
CATTATTATCCTTATCACTATGCATTTCACTCCATTTGTGCTCTCTATGCTTCTG
dot-bracket secondary structure
((((((((((((((((((((((.(((.(((((...............((((....)))).....((((...((((((((((.....))))))))))))))
....................))))).)))...)))))))))))))))).))))))
SIMILARITIES| miRBase ptc-MIR156j: 0.000000000008 PMRD ptc-miRf10223-akr: 0.000000000008 microPC miR157: 1e-84 | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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