miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse



ABOUT THIS RECORD

ID: MNEST045356
species: Liriodendron tulipifera
source: microPC, original name: miR159

Taxonomy by NCBI:
Liriodendron tulipifera Liriodendron Magnoliaceae Magnoliales magnoliids Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 CTTGGACTGAAGGGAGCTC

miRNA*
 GCTCTCTTCAGTCCAGTCC

mismatches: 1
bulges: 0
View larger
pre-miRNA
 CGAGCTCTCTTCAGTCCAGTCCAAGATAGTATTAAGCCAATCTCCGCTGCTGACTCGTTGGCTCATGAACTCATCCAACGGCTAGGATTCCGATGTGTTTT
TGATCCAACGATGCGGGAGCCGTGTTTGGTTCTGTCTGTCTCGTCTTGGACTGAAGGGAGCTC

dot-bracket secondary structure
)((((((((((((((((((..(.((((((.((..((((((.(.(.(((.(((..(((((((.(((.((((.((((....((........)))))).)))).
))).)))))))..))).))).).).))))))..)))))))).)..))))))))))))))))))


SIMILARITIES
miRBase vvi-MIR319b: 6.0E-13

PMRD ltu-miR319: 2.0E-89

microPC miR319: 2.0E-89		UniProt no hits

RFAM 9MIR159: 1.0E-11

Identical with: miR319 from microPC (MNEST045249), ltu-miR319 from PMRD

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
download this record




Liczniki na strone;