ABOUT THIS RECORDspecies: Liriodendron tulipifera
source: microPC, original name: miR159
Taxonomy by NCBI:
Liriodendron tulipifera Liriodendron Magnoliaceae Magnoliales magnoliids Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTTGGACTGAAGGGAGCTC miRNA* GCTCTCTTCAGTCCAGTCC mismatches: 1 bulges: 0 |
pre-miRNA
GAGCTCTCTTCAGTCCAGTCCAAGATAGTATTAAGCCAATCTCCGCTGCTGACTCGTTGGCTCATGAACTCATCCAACGGCTAGGATTCCGATGTGTTTT
TGATCCAACGATGCGGGAGCCGTGTTTGGTTCTGTCTGTCTCGTCTTGGACTGAAGGGAGCTC
dot-bracket secondary structure
((((((((((((((((((..(.((((((.((..((((((.(.(.(((.(((..(((((((.(((.((((.((((....((........)))))).)))).
))).)))))))..))).))).).).))))))..)))))))).)..))))))))))))))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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GAGCTCTCTTCAGTCCAGTCCAAGATAGTATTAAGCCAATCTCCGCTGCTGACTCGTTGGCTCATGAACTCATCCAACGGCTAGGATTCCGATGTGTTTT
TGATCCAACGATGCGGGAGCCGTGTTTGGTTCTGTCTGTCTCGTCTTGGACTGAAGGGAGCTC
dot-bracket secondary structure
((((((((((((((((((..(.((((((.((..((((((.(.(.(((.(((..(((((((.(((.((((.((((....((........)))))).)))).
))).)))))))..))).))).).).))))))..)))))))).)..))))))))))))))))))
SIMILARITIES| miRBase vvi-MIR319b: 0.0000000000006 PMRD ltu-miR319: 2e-89 microPC miR319: 2e-89 | UniProt no hits RFAM MIR159: 0.00000000001 |
Identical with: miR319 from microPC (MNEST045249) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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