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ABOUT THIS RECORD
ID:
MNEST045363
species:
Cichorium intybus
source:
microPC, original name:
miR166
Taxonomy by NCBI:
Cichorium intybus
Cichorium
Cichoriinae
Cichorieae
Cichorioideae
Asteraceae
Asterales
campanulids
asterids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
CGGACCAGGCTTCATTCCC
miRNA*
GGATGTTGTCTGGCTCCAGGC
mismatches:
3
bulges:
2
View larger
pre-miRNA
GAG
GGATGTTGTCTGGCTCCAGGC
CACTAGAGAACCTTATGGATCTCTCGATCTATGGATCTCTTTTCTCTCTATATATATTACATAATATATATGTATA
TCATCATAGTCAACGCATCTGATTTCATTGCCTTCGTTGACTAGAGATGGTGATAGATCATTCTTGATCTGGTGTCGT
CGGACCAGGCTTCATTCCC
dot-bracket secondary structure
..(
(((((..((((((.(((.(((
.((.(((((.((..(((((((....))))))))).)))))........((((((((((....))))))))))..((
(((((.(((((((((((..((....)).)))....))))))))..))))))).(((((((....)))))))..)).))
))))))))))..)))))).
SIMILARITIES
miRBase
vvi-MIR166e
:
0.00000001
PMRD
vvi-miR166e
:
0.00000001
microPC
miR166
:
3e-49
UniProt
no hits
RFAM
mir-166: 0.0000002
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
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