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ABOUT THIS RECORD

ID: MNEST045366
species: Populus tremula x Populus tremuloides
source: microPC, original name: miR397

Taxonomy by NCBI:
Populus tremula x Populus tremuloides Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 CATTGAGTGCAGCGTTGATG

miRNA*
 CCAGCGCTGCATTCAAT

mismatches: 2
bulges: 0
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pre-miRNA
 CATTGAGTGCAGCGTTGATGAAATCCTACATTTTGTGCTCTTAAACTGTTACCAACCCTTTATCCATGGCATCATTTCACCAGCGCTGCATTCAAT

dot-bracket secondary structure
.((((((((((((((((.((((((...(((.((((......)))).)))..(((............)))....)))))).))))))))))))))))


SIMILARITIES
miRBase ptc-MIR397a: 7e-36

PMRD ptc-miR397a: 7e-36

microPC miR397: 1e-49		UniProt no hits

RFAM MIR397: 3e-32

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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