ABOUT THIS RECORDspecies: Elaeis guineensis
miRNA family: MIR160
source: microPC, original name: miR160
Taxonomy by NCBI:
Elaeis guineensis Elaeis Elaeidinae Cocoseae Arecoideae Arecaceae Arecales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCCTGGCTCCCTGTATGCCA miRNA* GCGTGCGAGGAGCCAAGCA mismatches: 3 bulges: 0 |
pre-miRNA
TGCCTGGCTCCCTGTATGCCACTGGCTTAGAAACTAATCTATCAATAGATTAGCTACGGCGGGTGGCGTGCGAGGAGCCAAGCA
dot-bracket secondary structure
.((.(((((((.(((((((((((.((((((...((((((((....))))))))))).))).))))))))))).))))))).)).
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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TGCCTGGCTCCCTGTATGCCACTGGCTTAGAAACTAATCTATCAATAGATTAGCTACGGCGGGTGGCGTGCGAGGAGCCAAGCA
dot-bracket secondary structure
.((.(((((((.(((((((((((.((((((...((((((((....))))))))))).))).))))))))))).))))))).)).
SIMILARITIES| miRBase sbi-MIR160d: 0.00000006 PMRD oba-miR160: 9e-38 microPC miR160: 2e-42 | UniProt no hits RFAM mir-160: 2e-36 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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