ABOUT THIS RECORDspecies: Prunus persica
source: microPC, original name: miR171
Taxonomy by NCBI:
Prunus persica Prunus Amygdaleae Spiraeoideae Rosaceae Rosales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGAGCCGTGCCAATATCAT miRNA* GATGTTGGCGTGGCTCAATC mismatches: 1 bulges: 0 |
pre-miRNA
ATGTTGATGTTGGCGTGGCTCAATCAAATCAAACTTCTCAACTGTTTATTGGGTCCTTTAATTTGATTGAGCCGTGCCAATATCAT
dot-bracket secondary structure
....(((((((((((((((((((((((((.(((...(((((.......)))))...))).))))))))))))))))))))))))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
download this record
ATGTTGATGTTGGCGTGGCTCAATCAAATCAAACTTCTCAACTGTTTATTGGGTCCTTTAATTTGATTGAGCCGTGCCAATATCAT
dot-bracket secondary structure
....(((((((((((((((((((((((((.(((...(((((.......)))))...))).))))))))))))))))))))))))).
SIMILARITIES| miRBase vvi-MIR171i: 0.000000000000004 PMRD ppe-miR171: 1e-43 microPC miR171: 1e-40 | UniProt no hits RFAM MIR171_1: 0.00000000000008 |
Identical with: ppe-miR170 from PMRD (MNEST051345) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
download this record
