ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR396
source: microPC, original name: miR396
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTCCACAGCTTTCTTGAACT miRNA* TTCAATAAAGCTGTGGGA mismatches: 1 bulges: 0 |
pre-miRNA
TTCCACAGCTTTCTTGAACTGCACGCATGATGAATAATCCCTTTGGTTAATTGTGATCTGGTCTCTGAGAGATCGTAGCTAGACTCGATCGGTTGCATTG
GCATCAGAGAGAGCAGTTCAATAAAGCTGTGGGA
dot-bracket secondary structure
((((((((((((.(((((((((.((((((((.((........)).))))..))))......(((((((..(((((.((.....)))))))...(((....
))))))))))..))))))))).))))))))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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deep sequencing data evidence
TTCCACAGCTTTCTTGAACTGCACGCATGATGAATAATCCCTTTGGTTAATTGTGATCTGGTCTCTGAGAGATCGTAGCTAGACTCGATCGGTTGCATTG
GCATCAGAGAGAGCAGTTCAATAAAGCTGTGGGA
dot-bracket secondary structure
((((((((((((.(((((((((.((((((((.((........)).))))..))))......(((((((..(((((.((.....)))))))...(((....
))))))))))..))))))))).))))))))))))
SIMILARITIES| miRBase osa-MIR396a: 9e-70 PMRD osa-miR396a: 9e-70 microPC miR396: 4e-72 | UniProt no hits RFAM MIR396: 2e-68 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
download this record
deep sequencing data evidence
