ABOUT THIS RECORDspecies: Cryptomeria japonica
miRNA family: MIR398
source: microPC, original name: miR398
Taxonomy by NCBI:
Cryptomeria japonica Cryptomeria Cupressaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGTGTTCTCAGGTCACCCCTG miRNA* GGGATGAACTTGAGAACACACG mismatches: 1 bulges: 1 |
pre-miRNA
CAGGGATGAACTTGAGAACACACGGCCATCATATAGCATGATTGCACACAGAAATTGTGTGTGCATAATGTGTTATTTGATTAGGCATGTGTTCTCAGGT
CACCCCTG
dot-bracket secondary structure
(((((.(((.((((((((((((..(((((((.((((((((..((((((((.......))))))))...)))))))).))))..))).)))))))))))))
)).)))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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CAGGGATGAACTTGAGAACACACGGCCATCATATAGCATGATTGCACACAGAAATTGTGTGTGCATAATGTGTTATTTGATTAGGCATGTGTTCTCAGGT
CACCCCTG
dot-bracket secondary structure
(((((.(((.((((((((((((..(((((((.((((((((..((((((((.......))))))))...)))))))).))))..))).)))))))))))))
)).)))))
SIMILARITIES| miRBase ath-MIR398c: 0.000005 PMRD ath-miR398c: 0.000005 microPC miR398: 2e-55 | UniProt no hits RFAM MIR398: 0.00009 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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