ABOUT THIS RECORDspecies: Oryza sativa
source: microPC, original name: miR398
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGTGTTCTACAGGTCGCCCCTG miRNA* GGGGCGAGCTGGGAACACACG mismatches: 1 bulges: 1 |
pre-miRNA
CAGGGGCGAGCTGGGAACACACGGTGATAGAGGCGGTCTAGGTACTATTCGTGTGTTCTACAGGTCGCCCCTG
dot-bracket secondary structure
(((((((((.(((((((((((((..(((((.(.(......).).))))))))))))))).))).)))))))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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CAGGGGCGAGCTGGGAACACACGGTGATAGAGGCGGTCTAGGTACTATTCGTGTGTTCTACAGGTCGCCCCTG
dot-bracket secondary structure
(((((((((.(((((((((((((..(((((.(.(......).).))))))))))))))).))).)))))))))
SIMILARITIES| miRBase osa-MIR398b: 0.000000000004 PMRD osa-miR398b: 0.000000000004 microPC miR398: 0.000000000004 | UniProt no hits RFAM MIR398: 0.00000000006 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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