ABOUT THIS RECORDspecies: Ipomoea nil
source: microPC, original name: miR169
Taxonomy by NCBI:
Ipomoea nil Ipomoea Ipomoeeae Convolvulaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGCCAAGGATGACTTGCC miRNA* CGAGTTGTCCTTGGCT mismatches: 2 bulges: 0 |
pre-miRNA
AGCCAAGGATGACTTGCCGGCCGGTGAACTCTTCCTCCTATTGCGGCGGACCCAACCATATATCCACCGCTCCGTACACTCTCAGGGTGACGAAAAGTTT
GTAAGTTGGCGAGTTGTCCTTGGCT
dot-bracket secondary structure
(((((((((..((((((((((..(..((((............((((.(((............))).))))..(((.((((.....)))))))...)))).
.)..))))))))))..)))))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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AGCCAAGGATGACTTGCCGGCCGGTGAACTCTTCCTCCTATTGCGGCGGACCCAACCATATATCCACCGCTCCGTACACTCTCAGGGTGACGAAAAGTTT
GTAAGTTGGCGAGTTGTCCTTGGCT
dot-bracket secondary structure
(((((((((..((((((((((..(..((((............((((.(((............))).))))..(((.((((.....)))))))...)))).
.)..))))))))))..)))))))))
SIMILARITIES| miRBase osa-MIR169p: 0.000002 PMRD osa-miRf11416-akr: 0.000002 microPC miR169: 8e-67 | UniProt no hits RFAM MIR169_2: 0.00003 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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