ABOUT THIS RECORDspecies: Bruguiera gymnorhiza
miRNA family: MIR396
source: microPC, original name: miR396
Taxonomy by NCBI:
Bruguiera gymnorhiza Bruguiera Rhizophoraceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTCCACAGCTTTCTTGAACTT miRNA* GCTCAAGAAAGCTGTGGGA mismatches: 1 bulges: 0 |
pre-miRNA
TTCCACAGCTTTCTTGAACTTTCTTGAACTGCTTTTTATAATTTTTGTATATAGCACCATACATGGAAGCTCAAGAAAGCTGTGGGA
dot-bracket secondary structure
(((((((((((((((((.(((((.((...((((...((((.....))))...)))).....)).))))).)))))))))))))))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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TTCCACAGCTTTCTTGAACTTTCTTGAACTGCTTTTTATAATTTTTGTATATAGCACCATACATGGAAGCTCAAGAAAGCTGTGGGA
dot-bracket secondary structure
(((((((((((((((((.(((((.((...((((...((((.....))))...)))).....)).))))).)))))))))))))))))
SIMILARITIES| miRBase ptc-MIR396e: 0.00000007 PMRD ptc-miRf11357-akr: 0.00000007 microPC miR396: 3e-44 | UniProt no hits RFAM MIR396: 0.000001 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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