ABOUT THIS RECORDspecies: Bruguiera gymnorhiza
miRNA family: MIR396
source: microPC, original name: miR396
Taxonomy by NCBI:
Bruguiera gymnorhiza Bruguiera Rhizophoraceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTCCACAGCTTTCTTGAACTT miRNA* GCTCAAGAAAGCTGTGGGA mismatches: 1 bulges: 0 |
pre-miRNA
ATTCCACAGCTTTCTTGAACTTTCTTGAACTGCTTTTTATAATTTTTGTATATAGCACCATACATGGAAGCTCAAGAAAGCTGTGGGA
dot-bracket secondary structure
)(((((((((((((((((.(((((.((...((((...((((.....))))...)))).....)).))))).)))))))))))))))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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ATTCCACAGCTTTCTTGAACTTTCTTGAACTGCTTTTTATAATTTTTGTATATAGCACCATACATGGAAGCTCAAGAAAGCTGTGGGA
dot-bracket secondary structure
)(((((((((((((((((.(((((.((...((((...((((.....))))...)))).....)).))))).)))))))))))))))))
SIMILARITIES| miRBase ptc-MIR396e: 7.0E-8 PMRD ptc-miRf11357-akr: 7.0E-8 microPC miR396: 3.0E-44 | UniProt no hits RFAM 6MIR396: 1.0E-6 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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