miRNEST 2.0, an integrative microRNA resource :: Browse
Home
Browse miRNAs
Deep-seq predictions
Mirtrons
miRNA genes
Degradomes
Download
Upload
Contact
Back to search results
ABOUT THIS RECORD
ID:
MNEST045404
species:
Nicotiana tabacum
source:
microPC, original name:
miR159
Taxonomy by NCBI:
Nicotiana tabacum
Nicotiana
Nicotianeae
Nicotianoideae
Solanaceae
Solanales
lamiids
asterids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
ATTGGATCGAAGGGAGCTC
miRNA*
GCTCCTTGAAGTCCAACAG
mismatches:
4
bulges:
0
View larger
pre-miRNA
GA
GCTCCTTGAAGTCCAACAG
AGGATCTAACAGGTAAGATTAAGCTGCTGACCTATGGATTCCTCAGTCCTATCTATTATTTGATAGGATAGGTAAGTGG
GTAGCATATGTCAGGAGCTACATTACCCTAAGTTGGATCGCTT
ATTGGATCGAAGGGAGCTC
dot-bracket secondary structure
((
(((((((...((((((..(
((((((((((.(((((.....((((.(((((.((((...(((((.((((((((........)))))))).)).....))
)...)))).))))).))))...)))))....)))))))).)))
.))))))...)))))))))
SIMILARITIES
miRBase
sly-MIR159
:
6e-22
PMRD
sly-miR159
:
6e-22
microPC
miR159
:
9e-89
UniProt
no hits
RFAM
MIR159: 8e-28
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
download this record