miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Back to search results



ABOUT THIS RECORD

ID: MNEST045404
species: Nicotiana tabacum
source: microPC, original name: miR159

Taxonomy by NCBI:
Nicotiana tabacum Nicotiana Nicotianeae Nicotianoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
ATTGGATCGAAGGGAGCTC

miRNA*
GCTCCTTGAAGTCCAACAG

mismatches: 4
bulges: 0

View larger
pre-miRNA
GAGCTCCTTGAAGTCCAACAGAGGATCTAACAGGTAAGATTAAGCTGCTGACCTATGGATTCCTCAGTCCTATCTATTATTTGATAGGATAGGTAAGTGG
GTAGCATATGTCAGGAGCTACATTACCCTAAGTTGGATCGCTTATTGGATCGAAGGGAGCTC


dot-bracket secondary structure
(((((((((...((((((..(((((((((((.(((((.....((((.(((((.((((...(((((.((((((((........)))))))).)).....))
)...)))).))))).))))...)))))....)))))))).))).))))))...)))))))))



SIMILARITIES
miRBase sly-MIR159: 6e-22

PMRD sly-miR159: 6e-22

microPC miR159: 9e-89
UniProt no hits

RFAM MIR159: 8e-28

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
download this record





Liczniki na strone;