ABOUT THIS RECORDspecies: Cichorium intybus
miRNA family: MIR162
source: microPC, original name: miR162
Taxonomy by NCBI:
Cichorium intybus Cichorium Cichoriinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGATAAACCTCTGCATCCA miRNA* GATGCAGCGGTTCATCGATC mismatches: 3 bulges: 0 |
pre-miRNA
TGGATGCAGCGGTTCATCGATCTGTTCCCTAGGCCTGATGATGAATGAGTTATAGAATCTTAAGGAAAAAAAATCGAAGGTAGGAGATAGAGAGAGAAGA
GAGAGGCAAAAGGAATCGGTCGATAAACCTCTGCATCCA
dot-bracket secondary structure
.((((((((.((((.(((((((.(((((....((((.(((((......)))))....((((.............(....).............))))...
...))))....))))).))))))).)))).)))))))).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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TGGATGCAGCGGTTCATCGATCTGTTCCCTAGGCCTGATGATGAATGAGTTATAGAATCTTAAGGAAAAAAAATCGAAGGTAGGAGATAGAGAGAGAAGA
GAGAGGCAAAAGGAATCGGTCGATAAACCTCTGCATCCA
dot-bracket secondary structure
.((((((((.((((.(((((((.(((((....((((.(((((......)))))....((((.............(....).............))))...
...))))....))))).))))))).)))).)))))))).
SIMILARITIES| miRBase sly-MIR162: 0.000000000002 PMRD sly-miR162: 0.000000000002 microPC miR162: 6e-31 | UniProt no hits RFAM MIR162_2: 0.0000001 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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