ABOUT THIS RECORDspecies: Oryza sativa
source: microPC, original name: miR166
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGGACCAGGCTTCATTCCCCT miRNA* GGGAATGTTGTCTGGCTCGAGG mismatches: 4 bulges: 0 |
pre-miRNA
AGGGGAATGTTGTCTGGCTCGAGGTGCATGGAGAAACCTCTGATCGATCAGGTTTGATCTGTAGAGACTGATCTCGGACCAGGCTTCATTCCCCT
dot-bracket secondary structure
(((((((((..((((((..((((((.((.((((....))))((((((......)))))).........))))))))..))))))..)))))))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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AGGGGAATGTTGTCTGGCTCGAGGTGCATGGAGAAACCTCTGATCGATCAGGTTTGATCTGTAGAGACTGATCTCGGACCAGGCTTCATTCCCCT
dot-bracket secondary structure
(((((((((..((((((..((((((.((.((((....))))((((((......)))))).........))))))))..))))))..)))))))))
SIMILARITIES| miRBase osa-MIR166d: 5e-49 PMRD osa-miR166d: 5e-49 microPC miR166: 2e-45 | UniProt no hits RFAM mir-166: 9e-48 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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