ABOUT THIS RECORDspecies: Cucumis melo subsp. melo
source: microPC, original name: miR319
Taxonomy by NCBI:
Cucumis melo subsp. melo Cucumis melo Cucumis Cucurbitaceae Cucurbitales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGGACTGAAGGGAGCTCCC miRNA* GAGCTTTCTTCAGTCCACTC mismatches: 5 bulges: 0 |
pre-miRNA
GAGAGCTTTCTTCAGTCCACTCATGGGTGGCGGTAGGGTTTAATTAGCTGCCGACTCATTCATTCAAATATTGAGTCCAAAAATTTCAAATCTCAAATGG
ATTCACTAAACGATTGAATGATGCGGGAGACAAATTGAATCTTAAGCTTCCTGTACTTGGACTGAAGGGAGCTCCC
dot-bracket secondary structure
..(((((..((((((((((...(((((.(((..((((((((((((.(((.(((..(((((((.((...((.((((((((..................)))
))))).))...)).)))))))..))).)).).)))))))))))).))).)))))...))))))))))..)))))..
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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GAGAGCTTTCTTCAGTCCACTCATGGGTGGCGGTAGGGTTTAATTAGCTGCCGACTCATTCATTCAAATATTGAGTCCAAAAATTTCAAATCTCAAATGG
ATTCACTAAACGATTGAATGATGCGGGAGACAAATTGAATCTTAAGCTTCCTGTACTTGGACTGAAGGGAGCTCCC
dot-bracket secondary structure
..(((((..((((((((((...(((((.(((..((((((((((((.(((.(((..(((((((.((...((.((((((((..................)))
))))).))...)).)))))))..))).)).).)))))))))))).))).)))))...))))))))))..)))))..
SIMILARITIES| miRBase ptc-MIR319a: 2e-31 PMRD ptc-miR319a: 2e-31 microPC miR319: 3e-95 | UniProt no hits RFAM MIR159: 4e-30 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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