ABOUT THIS RECORDspecies: Populus nigra
miRNA family: MIR398
source: microPC, original name: miR398
Taxonomy by NCBI:
Populus nigra Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGTGTTCTCAGGTCGCCCCTG miRNA* GGAGCGACCTGAAATCACATG mismatches: 4 bulges: 0 |
pre-miRNA
CAGGAGCGACCTGAAATCACATGTGGGCTGCACCCTCCTGGGTTATCTTGGGCAACATGTGTTCTCAGGTCGCCCCTG
dot-bracket secondary structure
((((.(((((((((...((((((((((.....))).((..((....))..))..)))))))...))))))))).))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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CAGGAGCGACCTGAAATCACATGTGGGCTGCACCCTCCTGGGTTATCTTGGGCAACATGTGTTCTCAGGTCGCCCCTG
dot-bracket secondary structure
((((.(((((((((...((((((((((.....))).((..((....))..))..)))))))...))))))))).))))
SIMILARITIES| miRBase ptc-MIR398c: 1e-36 PMRD ptc-miR398c: 1e-36 microPC miR398: 8e-38 | UniProt no hits RFAM MIR398: 0.00000000007 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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