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ABOUT THIS RECORD
ID:
MNEST045424
species:
Populus deltoides
source:
microPC, original name:
miR166
Taxonomy by NCBI:
Populus deltoides
Populus
Saliceae
Salicaceae
Malpighiales
fabids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TCGGACCAGGCTTCATTCCC
miRNA*
GAATGCTGGCTGGCTCGAAG
mismatches:
5
bulges:
0
View larger
pre-miRNA
GG
GAATGCTGGCTGGCTCGAAG
CTTAAGCAAAGAGTATCCTAACATGAAACAACTGTTAAGGCT
TCGGACCAGGCTTCATTCCC
dot-bracket secondary structure
((
(((((..(.((((..(((((
(((.((((....((.((.......)).))...)))).)))))
)))..)))).)..)))))))
SIMILARITIES
miRBase
ptc-MIR166f
:
9e-38
PMRD
ptc-miR166f
:
9e-38
microPC
miR166
:
2e-42
UniProt
no hits
RFAM
mir-166: 6e-27
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
true miRNA
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