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ABOUT THIS RECORD
ID:
MNEST045428
species:
Populus tremula
source:
microPC, original name:
miR159
Taxonomy by NCBI:
Populus tremula
Populus
Saliceae
Salicaceae
Malpighiales
fabids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TTGGATTGAAGGGAGCTCTA
miRNA*
GAGCTCCTTGAAGTCCAATA
mismatches:
2
bulges:
0
View larger
pre-miRNA
TG
GAGCTCCTTGAAGTCCAATA
GAAGCTCCTGCTGGGTAGATCGAGCTGCTGAGCTATGAATCCCACAGCCCTATCACCATCTGTTATTTTGACGGGCCT
GCGGCTTGCATATCTCAGGAGCTTTATTACCTAATGTTGGATCTTTTT
TTGGATTGAAGGGAGCTCTA
dot-bracket secondary structure
((
(((((((((..(((((((.(
((((.(((.(((((((((...(((((.(((((.((((....((.(((.((..(((.............)))..)).))
).))....)))).))))).)))))..)))))))..)).))).))))).
)))))))..)))))))))))
SIMILARITIES
miRBase
ptc-MIR159b
:
3e-70
PMRD
ptc-miR159b
:
3e-70
microPC
miR159
:
8e-80
UniProt
no hits
RFAM
MIR159: 3e-67
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
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