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ABOUT THIS RECORD
ID:
MNEST045442
species:
Populus tremula
source:
microPC, original name:
miR169
Taxonomy by NCBI:
Populus tremula
Populus
Saliceae
Salicaceae
Malpighiales
fabids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
AGCCAAGGATGACTTGCCGA
miRNA*
GGCAGGTTGTTCTTGGCT
mismatches:
2
bulges:
0
View larger
pre-miRNA
AGCCAAGGATGACTTGCCGA
CGACTCGCTTTTGCTTTTGCTTCCATCAATATAGGCATAATCAAGAAGAGATGAATCCGTT
GGCAGGTTGTTCTTGGCT
dot-bracket secondary structure
(((((((((..(((((((((
((..((((((((.(((.(((((..........))))).....)))))))).)))...))))
)))))))..)))))))))
SIMILARITIES
miRBase
ptc-MIR169b
:
2e-30
PMRD
ptr-miR169a
:
2e-51
microPC
miR169
:
2e-51
UniProt
no hits
RFAM
MIR169_2: 3e-29
Identical with:
ptr-miR169a
from PMRD (
MNEST054367
)
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
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