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ABOUT THIS RECORD
ID:
MNEST045445
species:
Brassica napus
source:
microPC, original name:
miR159
Taxonomy by NCBI:
Brassica napus
Brassica
Brassicaceae
Brassicales
malvids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TTGGATTGAAGGGAGCTC
miRNA*
GCTCCTTATAGTTCAAAC
mismatches:
1
bulges:
0
View larger
pre-miRNA
GG
GCTCCTTATAGTTCAAAC
GAGAGTTCAGCAGGGTAAAGAAAAGCTGCTAAGCTATGAATCCCATAAGCCCTAATCCTTATTTATAAAAAGGATTTGGT
TATATGGCTTACATATCTCAGGAGCTTTAACTTGCCCTTTAATTGCTTTTACTCTTCT
TTGGATTGAAGGGAGCTC
dot-bracket secondary structure
((
(((((((.(((((((((.
((((((..((((((((((...((((((.((.((.((((.(..(((((((((..(((((((.........))))))).)))
).)))))..).)))).)).)).))))))...))))))......))))...)))))).)
)))))))).)))))))))
SIMILARITIES
miRBase
bra-MIR159a
:
3e-92
PMRD
bra-miR159a
:
3e-92
microPC
miR159
:
4e-97
UniProt
no hits
RFAM
MIR159: 1e-60
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
true miRNA
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