miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Back to search results



ABOUT THIS RECORD

ID: MNEST045445
species: Brassica napus
source: microPC, original name: miR159

Taxonomy by NCBI:
Brassica napus Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TTGGATTGAAGGGAGCTC

miRNA*
GCTCCTTATAGTTCAAAC

mismatches: 1
bulges: 0

View larger
pre-miRNA
GGGCTCCTTATAGTTCAAACGAGAGTTCAGCAGGGTAAAGAAAAGCTGCTAAGCTATGAATCCCATAAGCCCTAATCCTTATTTATAAAAAGGATTTGGT
TATATGGCTTACATATCTCAGGAGCTTTAACTTGCCCTTTAATTGCTTTTACTCTTCTTTGGATTGAAGGGAGCTC


dot-bracket secondary structure
(((((((((.(((((((((.((((((..((((((((((...((((((.((.((.((((.(..(((((((((..(((((((.........))))))).)))
).)))))..).)))).)).)).))))))...))))))......))))...)))))).))))))))).)))))))))



SIMILARITIES
miRBase bra-MIR159a: 3e-92

PMRD bra-miR159a: 3e-92

microPC miR159: 4e-97
UniProt no hits

RFAM MIR159: 1e-60

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
download this record





Liczniki na strone;