ABOUT THIS RECORDspecies: Pinus taeda
miRNA family: MIR949
source: microPC, original name: miR949
Taxonomy by NCBI:
Pinus taeda Pinus Pinus Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCTCCGGGAATCCAATGCGCC miRNA* TGTATTGATTTCCGGGGA mismatches: 0 bulges: 1 |
pre-miRNA
TCTCCGGGAATCCAATGCGCCTTCCTCTTGAACGCCTTTCAACGCGCGTGCTGTGCGTGAAAACGCGTTTAGGAGGAAGGTGTATTGATTTCCGGGGA
dot-bracket secondary structure
((((((((((((.((((((((((((((((((((((.(((((.(((((.....))))))))))..))))))))))))))))))))))))))))))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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TCTCCGGGAATCCAATGCGCCTTCCTCTTGAACGCCTTTCAACGCGCGTGCTGTGCGTGAAAACGCGTTTAGGAGGAAGGTGTATTGATTTCCGGGGA
dot-bracket secondary structure
((((((((((((.((((((((((((((((((((((.(((((.(((((.....))))))))))..))))))))))))))))))))))))))))))))))
SIMILARITIES| miRBase pta-MIR949: 8e-51 PMRD pta-miR949: 8e-51 microPC miR949: 3e-44 | UniProt no hits RFAM no hits |
Identical with: pta-miR949 from PMRD (MNEST051577) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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