ABOUT THIS RECORDspecies: Brassica rapa
source: microPC, original name: miR156
Taxonomy by NCBI:
Brassica rapa Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GACAGAAGAGAGTGAGCAC miRNA* GCTCACTGCTCTTTCTGTC mismatches: 0 bulges: 2 |
pre-miRNA
GACAGAAGAGAGTGAGCACACAAAAGTAAATTGCATATGTTGCATTTGCTTCTCTTGCGTGCTCACTGCTCTTTCTGTC
dot-bracket secondary structure
(((((((((((((((((((.(((((((((((.(((.....)))))))))))...))).))))))))).))).)))))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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GACAGAAGAGAGTGAGCACACAAAAGTAAATTGCATATGTTGCATTTGCTTCTCTTGCGTGCTCACTGCTCTTTCTGTC
dot-bracket secondary structure
(((((((((((((((((((.(((((((((((.(((.....)))))))))))...))).))))))))).))).)))))))
SIMILARITIES| miRBase bna-MIR156a: 5e-30 PMRD bna-miR156a: 5e-30 microPC miR156: 1e-39 | UniProt no hits RFAM mir-156: 3e-22 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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