ABOUT THIS RECORDspecies: Populus deltoides
source: microPC, original name: miR166
Taxonomy by NCBI:
Populus deltoides Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGGACCAGGCTTCATTCCCCT miRNA* GGGAATGCTGGCTGGCTCGAAG mismatches: 5 bulges: 0 |
pre-miRNA
AGGGGAATGCTGGCTGGCTCGAAGCTTAAGCAAAGAGTATCCTAACATGAAACAACTGTTAAGGCTTCGGACCAGGCTTCATTCCCCT
dot-bracket secondary structure
(((((((((..(.((((..((((((((.((((....((.((.......)).))...)))).))))))))..)))).)..)))))))))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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AGGGGAATGCTGGCTGGCTCGAAGCTTAAGCAAAGAGTATCCTAACATGAAACAACTGTTAAGGCTTCGGACCAGGCTTCATTCCCCT
dot-bracket secondary structure
(((((((((..(.((((..((((((((.((((....((.((.......)).))...)))).))))))))..)))).)..)))))))))
SIMILARITIES| miRBase ptc-MIR166f: 4e-40 PMRD ptc-miR166f: 4e-40 microPC miR166: 1e-43 | UniProt no hits RFAM mir-166: 3e-29 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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