ABOUT THIS RECORDspecies: Brassica oleracea var. alboglabra
miRNA family: MIR171
source: microPC, original name: miR171
Taxonomy by NCBI:
Brassica oleracea var. alboglabra Brassica oleracea Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGAGCCGTGCCAATATCACT miRNA* CGATATTGGTACGGTTGAATC mismatches: 4 bulges: 0 |
pre-miRNA
AGCGATATTGGTACGGTTGAATCGAATCAAATCACTCTATCTTTCTCTTGGGTCAGTTGATTTGATTGAGCCGTGCCAATATCACT
dot-bracket secondary structure
...(((((((((((((((.(((((((((((...((((............))))...))))))))))).)))))))))))))))...
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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AGCGATATTGGTACGGTTGAATCGAATCAAATCACTCTATCTTTCTCTTGGGTCAGTTGATTTGATTGAGCCGTGCCAATATCACT
dot-bracket secondary structure
...(((((((((((((((.(((((((((((...((((............))))...))))))))))).)))))))))))))))...
SIMILARITIES| miRBase ptc-MIR171i: 0.00000002 PMRD ptc-miR171i: 0.00000002 microPC miR171: 2e-42 | UniProt no hits RFAM MIR171_1: 0.0000003 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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