ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: miR1850.1
source: microPC, original name: miR1850
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGGAAAGTTGGGAGATTGGGG miRNA* CCAAATTCCCAACTTTTCA mismatches: 2 bulges: 0 |
pre-miRNA
TGGAAAGTTGGGAGATTGGGGGAAGTTGTGTGTGAACTAAACGTGGATTGGGGCCCTGTTTAGTTCACATCAATCTTCCTCCAAATTCCCAACTTTTCA
dot-bracket secondary structure
.(((((((((((((.(((((((((((((.((((((((((((((.((.......)).))))))))))))))))).)))))))))).))))))))))))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
download this record
deep sequencing data evidence
TGGAAAGTTGGGAGATTGGGGGAAGTTGTGTGTGAACTAAACGTGGATTGGGGCCCTGTTTAGTTCACATCAATCTTCCTCCAAATTCCCAACTTTTCA
dot-bracket secondary structure
.(((((((((((((.(((((((((((((.((((((((((((((.((.......)).))))))))))))))))).)))))))))).))))))))))))).
SIMILARITIES| miRBase osa-MIR1850: 2e-51 PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
download this record
deep sequencing data evidence
