ABOUT THIS RECORDspecies: Oryza sativa
source: microPC, original name: miR160
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GCCTGGCTCCCTGTATGCC miRNA* CGTGCACGGAGCCAAGC mismatches: 2 bulges: 0 |
pre-miRNA
GCCTGGCTCCCTGTATGCCACTCATCTAGAGCAACAAACTTCTGCGAGAGGTTGCCTATGATGGATGGCGTGCACGGAGCCAAGC
dot-bracket secondary structure
((.(((((((.(((((((((..(((((((.(((((...(((....)))..)))))))).))))..))))))))).))))))).))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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GCCTGGCTCCCTGTATGCCACTCATCTAGAGCAACAAACTTCTGCGAGAGGTTGCCTATGATGGATGGCGTGCACGGAGCCAAGC
dot-bracket secondary structure
((.(((((((.(((((((((..(((((((.(((((...(((....)))..)))))))).))))..))))))))).))))))).))
SIMILARITIES| miRBase osa-MIR160c: 4e-43 PMRD osa-miR160c: 4e-43 microPC miR160: 4e-43 | UniProt no hits RFAM mir-160: 7e-42 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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