ABOUT THIS RECORDspecies: Oryza sativa
source: microPC, original name: miR156
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GACAGAAGAGAGTGAGCAC miRNA* GCTCGCTCCTCTTTCTGTC mismatches: 0 bulges: 2 |
pre-miRNA
GACAGAAGAGAGTGAGCACACGGCGCGGCGGCTAGCCATCGGCGGGATGCCTGCCCCCGCCGTGTGCTCGCTCCTCTTTCTGTC
dot-bracket secondary structure
(((((((((((((((((((((((((.((.(((.((.((((.....)))).)))))))))))))))))))))).))).)))))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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GACAGAAGAGAGTGAGCACACGGCGCGGCGGCTAGCCATCGGCGGGATGCCTGCCCCCGCCGTGTGCTCGCTCCTCTTTCTGTC
dot-bracket secondary structure
(((((((((((((((((((((((((.((.(((.((.((((.....)))).)))))))))))))))))))))).))).)))))))
SIMILARITIES| miRBase osa-MIR156j: 4e-40 PMRD osa-miR156m: 4e-40 microPC miR156: 2e-42 | UniProt no hits RFAM mir-156: 7e-39 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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