ABOUT THIS RECORDspecies: Nicotiana tabacum
miRNA family: MIR171
source: microPC, original name: miR171
Taxonomy by NCBI:
Nicotiana tabacum Nicotiana Nicotianeae Nicotianoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGAGCCGCGCCAATATCACT miRNA* CGATGTTGGTGAGGTTCAATC mismatches: 4 bulges: 0 |
pre-miRNA
AGCGATGTTGGTGAGGTTCAATCCGAAGACGAGTTTACGTTTTGTTTTCGTAAAGAACGATCTCAGATTGAGCCGCGCCAATATCACT
dot-bracket secondary structure
...((((((((((.(((((((((((((((((((.......))))))))))....((......)).))))))))).))))))))))...
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
download this record
AGCGATGTTGGTGAGGTTCAATCCGAAGACGAGTTTACGTTTTGTTTTCGTAAAGAACGATCTCAGATTGAGCCGCGCCAATATCACT
dot-bracket secondary structure
...((((((((((.(((((((((((((((((((.......))))))))))....((......)).))))))))).))))))))))...
SIMILARITIES| miRBase sly-MIR171d: 1e-30 PMRD sly-miR171d: 1e-30 microPC miR171: 1e-43 | UniProt no hits RFAM MIR171_1: 3e-29 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
download this record
