ABOUT THIS RECORDspecies: Populus tremula x Populus alba
miRNA family: MIR398
source: microPC, original name: miR398
Taxonomy by NCBI:
Populus tremula x Populus alba Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGTGTTCTCAGGTCGCCCCTG miRNA* GGAGCGACCTGAAATCACATG mismatches: 4 bulges: 0 |
pre-miRNA
CAGGAGCGACCTGAAATCACATGTGGGCTGCACGGCAACATGTGTTCTCAGGTCGCCCCTG
dot-bracket secondary structure
((((.(((((((((...(((((((..(((....))).)))))))...))))))))).))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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CAGGAGCGACCTGAAATCACATGTGGGCTGCACGGCAACATGTGTTCTCAGGTCGCCCCTG
dot-bracket secondary structure
((((.(((((((((...(((((((..(((....))).)))))))...))))))))).))))
SIMILARITIES| miRBase ptc-MIR398c: 0.000000000003 PMRD ptc-miR398c: 0.000000000003 microPC miR398: 9e-28 | UniProt no hits RFAM MIR398: 1e-27 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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