ABOUT THIS RECORDspecies: Nicotiana langsdorffii x Nicotiana sanderae
miRNA family: MIR156
source: microPC, original name: miR156
Taxonomy by NCBI:
Nicotiana langsdorffii x Nicotiana sanderae Nicotiana Nicotianeae Nicotianoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGACAGAAGAGAGTGAGCACA miRNA* TGCTCACTTCTCTTTCTGTCA mismatches: 1 bulges: 2 |
pre-miRNA
TGACAGAAGAGAGTGAGCACACGCACACAATTGTATACAGTGTATACTTTTGTGTTTATATTATTTGCGTGTGCTCACTTCTCTTTCTGTCA
dot-bracket secondary structure
.(((((((((((((((((((((((((((((..((((((...))))))..))))))...........)))))))))))).)))).))))))).
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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TGACAGAAGAGAGTGAGCACACGCACACAATTGTATACAGTGTATACTTTTGTGTTTATATTATTTGCGTGTGCTCACTTCTCTTTCTGTCA
dot-bracket secondary structure
.(((((((((((((((((((((((((((((..((((((...))))))..))))))...........)))))))))))).)))).))))))).
SIMILARITIES| miRBase tcc-MIR156c: 0.000000004 PMRD stu-miR156a: 0.00000007 microPC miR156: 3e-47 | UniProt no hits RFAM mir-156: 0.00000008 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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