ABOUT THIS RECORDspecies: Lactuca sativa
source: microPC, original name: miR159
Taxonomy by NCBI:
Lactuca sativa Lactuca Lactucinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATTGGGGTGAAGGGAGCTC miRNA* GCTCTCTATCGCCTCGACCC mismatches: 1 bulges: 1 |
pre-miRNA
GAGCTCTCTATCGCCTCGACCCTGAAAGGAAATCGATCATGGTGGTTCATGGCTGCTCTTTCATGAATGCTTGTAGGTGCACCAATGTTGTTGTAGTGTG
CATTCTAAGGTTAGCATGAAGGTGGAGCCATGGTTTGATCATCTTTTTGGGATTGGGGTGAAGGGAGCTC
dot-bracket secondary structure
(((((((((.(((((((((.((..((((((....(((((.......((((((((.(.((((((((...((((.((((((((((.((......)).).)))
)).))))))))...)))))))).).))))))))..))))).))))))..)).))))))))))))))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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GAGCTCTCTATCGCCTCGACCCTGAAAGGAAATCGATCATGGTGGTTCATGGCTGCTCTTTCATGAATGCTTGTAGGTGCACCAATGTTGTTGTAGTGTG
CATTCTAAGGTTAGCATGAAGGTGGAGCCATGGTTTGATCATCTTTTTGGGATTGGGGTGAAGGGAGCTC
dot-bracket secondary structure
(((((((((.(((((((((.((..((((((....(((((.......((((((((.(.((((((((...((((.((((((((((.((......)).).)))
)).))))))))...)))))))).).))))))))..))))).))))))..)).))))))))))))))))))
SIMILARITIES| miRBase ptc-MIR159e: 0.00003 PMRD ptc-miR159e: 0.00003 microPC miR159: 2e-93 | UniProt no hits RFAM MIR159: 0.0006 |
Identical with: miR319 from microPC (MNEST046103) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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