ABOUT THIS RECORDspecies: Bruguiera gymnorhiza
miRNA family: MIR157
source: microPC, original name: miR157
Taxonomy by NCBI:
Bruguiera gymnorhiza Bruguiera Rhizophoraceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGACAGAAGATAGAGAGCAC miRNA* GCTCTCTATGCTTCTGTCA mismatches: 1 bulges: 1 |
pre-miRNA
TTGACAGAAGATAGAGAGCACAGATGATGATGTGCAATTTTTGGATTCTGCATCTCACTCCTTTGTGCTCTCTATGCTTCTGTCA
dot-bracket secondary structure
.(((((((((((((((((((((((.(((((.(((((............))))).))).)).)))))))))))))).)))))))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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TTGACAGAAGATAGAGAGCACAGATGATGATGTGCAATTTTTGGATTCTGCATCTCACTCCTTTGTGCTCTCTATGCTTCTGTCA
dot-bracket secondary structure
.(((((((((((((((((((((((.(((((.(((((............))))).))).)).)))))))))))))).)))))))))
SIMILARITIES| miRBase rco-MIR156h: 5e-27 PMRD ptc-miRf10223-akr: 8e-26 microPC miR157: 2e-42 | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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