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ABOUT THIS RECORD
ID:
MNEST045543
species:
Carica papaya
miRNA family:
MIR535
source:
microPC, original name:
miR535
Taxonomy by NCBI:
Carica papaya
Carica
Caricaceae
Brassicales
malvids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TGACAACGAGAGAGAGCACGC
miRNA*
GTGCTCTATGTCGTTGTCA
mismatches:
3
bulges:
0
View larger
pre-miRNA
TGACAACGAGAGAGAGCACGC
TTGTTATCACTCATCCGAGGTATATGATTGTGTACGGGC
GTGCTCTATGTCGTTGTCA
dot-bracket secondary structure
.((((((((.(.(((((((((
((((...((.((((.........)))).))...))))))
))))))).).)))))))).
SIMILARITIES
miRBase
vvi-MIR535c
:
0.00000000006
PMRD
vvi-miR535e
:
0.00000000006
microPC
miR535
:
1e-39
UniProt
no hits
RFAM
MIR535: 2e-38
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
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