ABOUT THIS RECORDspecies: Lactuca virosa
source: microPC, original name: miR171
Taxonomy by NCBI:
Lactuca virosa Lactuca Lactucinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGATTGAGCCGTGCCAATAT miRNA* GTTGGAATGGCTCAATCAAA mismatches: 1 bulges: 0 |
pre-miRNA
TATGTTGGAATGGCTCAATCAAATCAGATCTCCCCGGATGAATCAACAGGGTGTTTTAGTTTGATTGAGCCGTGCCAATAT
dot-bracket secondary structure
)(((((((.(((((((((((((((.(((.(.(((.(..........).))).).))).))))))))))))))).)))))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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TATGTTGGAATGGCTCAATCAAATCAGATCTCCCCGGATGAATCAACAGGGTGTTTTAGTTTGATTGAGCCGTGCCAATAT
dot-bracket secondary structure
)(((((((.(((((((((((((((.(((.(.(((.(..........).))).).))).))))))))))))))).)))))))
SIMILARITIES| miRBase vvi-MIR171i: 1.0E-9 PMRD vvi-miR171i: 1.0E-9 microPC miR171: 4.0E-40 | UniProt no hits RFAM 1MIR171_1: 2.0E-8 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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