ABOUT THIS RECORDspecies: Gossypium hirsutum
miRNA family: MIR162
source: microPC, original name: miR162
Taxonomy by NCBI:
Gossypium hirsutum Gossypium Malvoideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGATAAACCTCTGCATCCAG miRNA* GGAGGCAGCGGTTCATCGATC mismatches: 3 bulges: 0 |
pre-miRNA
CTGGAGGCAGCGGTTCATCGATCTCTTCCTGAGAATTTTGTTGTGAGAATAACACAAATACATGAATCGATCGATAAACCTCTGCATCCAG
dot-bracket secondary structure
(((((.((((.((((.(((((((..(((.((...((((((((((....)))))).)))).)).)))..))))))).)))).)))).)))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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CTGGAGGCAGCGGTTCATCGATCTCTTCCTGAGAATTTTGTTGTGAGAATAACACAAATACATGAATCGATCGATAAACCTCTGCATCCAG
dot-bracket secondary structure
(((((.((((.((((.(((((((..(((.((...((((((((((....)))))).)))).)).)))..))))))).)))).)))).)))))
SIMILARITIES| miRBase ghr-MIR162a: 1e-46 PMRD ghr-miR162a: 1e-46 microPC miR162: 2e-45 | UniProt no hits RFAM MIR162_2: 4e-19 |
Identical with: ghr-MIR162a from miRBase (MNEST041046) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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