ABOUT THIS RECORDspecies: Brassica napus
miRNA family: MIR399
source: microPC, original name: miR399
Taxonomy by NCBI:
Brassica napus Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCCAAAGGAGATTTGCCCGG miRNA* GGGCAAGATCTCTATTGGCAGA mismatches: 3 bulges: 1 |
pre-miRNA
CAGGGCAAGATCTCTATTGGCAGAAAACCATTACTTAGATCTTTGCATCTCTTTCTGCATTGATTTGTAGTGAGTTCTCTGCCAAAGGAGATTTGCCCGG
dot-bracket secondary structure
..(((((.(((((((.((((((((.(((((((((..(((((..((((........))))..))))))))))).))).)))))))).))))))))))))..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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CAGGGCAAGATCTCTATTGGCAGAAAACCATTACTTAGATCTTTGCATCTCTTTCTGCATTGATTTGTAGTGAGTTCTCTGCCAAAGGAGATTTGCCCGG
dot-bracket secondary structure
..(((((.(((((((.((((((((.(((((((((..(((((..((((........))))..))))))))))).))).)))))))).))))))))))))..
SIMILARITIES| miRBase bna-MIR399: 5e-52 PMRD bna-miR399: 5e-52 microPC miR399: 1e-49 | UniProt no hits RFAM mir-399: 1e-28 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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