ABOUT THIS RECORDspecies: Lotus japonicus
miRNA family: MIR408
source: microPC, original name: miR408
Taxonomy by NCBI:
Lotus japonicus Lotus Loteae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATGCACTGCCTCTTCCCTGGC miRNA* CAGGAAAGAGGCAGAGCATGG mismatches: 4 bulges: 0 |
pre-miRNA
GCAGGAAAGAGGCAGAGCATGGATGGAGCTATCAACAAAATAAATTGAGAATGGGAGATGTTTGTTGTGGCTCTACTCATGCACTGCCTCTTCCCTGGC
dot-bracket secondary structure
.((((.(((((((((.(((((..((((((((.(((((((....(((..........))).)))))))))))))))..))))).))))))))).))))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
download this record
GCAGGAAAGAGGCAGAGCATGGATGGAGCTATCAACAAAATAAATTGAGAATGGGAGATGTTTGTTGTGGCTCTACTCATGCACTGCCTCTTCCCTGGC
dot-bracket secondary structure
.((((.(((((((((.(((((..((((((((.(((((((....(((..........))).)))))))))))))))..))))).))))))))).))))..
SIMILARITIES| miRBase ptc-MIR408: 0.0000000003 PMRD ppe-miR408: 0.00000000000002 microPC miR408: 2e-51 | UniProt no hits RFAM MIR408: 9e-48 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
download this record
